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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G002600.3.p | ||||||||
Common Name | PRUPE_ppa011529mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Whirly | ||||||||
Protein Properties | Length: 208aa MW: 22531 Da PI: 9.9344 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 199.6 | 4.1e-62 | 33 | 168 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 ++k+kaal++++v+ptf++l+sgnl+++r+G ++l++++a++erkydWek q+falsatev++l++l++k+sce+fhdp++k+sn+G+vrk Prupe.8G002600.3.p 33 IFKGKAALSLNPVLPTFTKLESGNLVVSRRGVVMLKFTPAIGERKYDWEKNQVFALSATEVGSLISLGPKDSCELFHDPSMKSSNAGQVRK 123 9****************************************************************************************** PP Whirly 93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 +l+++ ++dGsG++v+l+v n+l+k++e+f vPv+ aefav++++ Prupe.8G002600.3.p 124 SLSIKCHADGSGYLVSLAVVNNLLKTKENFIVPVTAAEFAVMKTA 168 *******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.8E-72 | 20 | 187 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.04E-63 | 26 | 188 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.2E-58 | 33 | 167 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MHAYTHSSSF STASKSFSVK GTSAHNVFAS FNIFKGKAAL SLNPVLPTFT KLESGNLVVS 60 RRGVVMLKFT PAIGERKYDW EKNQVFALSA TEVGSLISLG PKDSCELFHD PSMKSSNAGQ 120 VRKSLSIKCH ADGSGYLVSL AVVNNLLKTK ENFIVPVTAA EFAVMKTACS FVLPHIMGWD 180 RLMSNMPTVV GGQQSKVVPQ LLDEWDR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_D | 6e-84 | 27 | 186 | 11 | 170 | Single-stranded DNA-binding protein WHY2, mit |
4kop_C | 6e-84 | 27 | 186 | 11 | 170 | Single-stranded DNA-binding protein WHY2, mit |
4kop_B | 6e-84 | 27 | 186 | 11 | 170 | Single-stranded DNA-binding protein WHY2, mit |
4kop_A | 6e-84 | 27 | 186 | 11 | 170 | Single-stranded DNA-binding protein WHY2, mit |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007200526.1 | 1e-153 | hypothetical protein PRUPE_ppa011529mg | ||||
Swissprot | D9J034 | 3e-89 | WHY2_SOLTU; Single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
TrEMBL | M5W4K9 | 1e-153 | M5W4K9_PRUPE; Uncharacterized protein | ||||
STRING | Solyc11g044750.1.1 | 8e-87 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-87 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G002600.3.p |
Entrez Gene | 18766913 |